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  "Title": "Time Dependent Shared Frailty Cox Model",
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  "Authors@R": "c(\nperson(\"Alessandra\", \"Ragni\", , \"alessandra.ragni@polimi.it\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3647-7340\")),\nperson(\"Giulia\", \"Romani\", , \"giulia.romani@mail.polimi.it\", role = \"aut\"),\nperson(\"Chiara\", \"Masci\", , \"chiara.masci@polimi.it\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-9208-3194\")) )",
  "Description": "Fits time-dependent shared frailty Cox model (specifically\nthe adapted Paik et al.'s Model) based on the paper\n\"Centre-Effect on Survival After Bone Marrow Transplantation:\nApplication of Time-Dependent Frailty Models\", by C.M.\nWintrebert, H. Putter, A.H. Zwinderman and J.C. van Houwelingen\n(2004) <doi:10.1002/bimj.200310051>.",
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  "Date/Publication": "2026-02-05 17:21:44 UTC",
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    "plot_frailty_sd",
    "plot_ll_1D",
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    "plot_survivalAdPaik",
    "post_frailty_confint",
    "post_frailty_est",
    "post_frailty_var",
    "survivalAdPaik"
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      "title": "Dropout Dataset",
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        "CFUP",
        "time_to_event",
        "group"
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      "tojson": true
    }
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      "page": "AdPaik_1D",
      "title": "One-Dimensional Analysis of log-Likelihood Function",
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        "AdPaik_1D"
      ]
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    {
      "page": "AdPaikModel",
      "title": "Adapted Paik et Al.'s Model: Time-Dependent Shared Frailty Cox Model",
      "topics": [
        "AdPaikModel"
      ]
    },
    {
      "page": "bas_hazard",
      "title": "Baseline Hazard Step-Function",
      "topics": [
        "bas_hazard"
      ]
    },
    {
      "page": "coef.AdPaik",
      "title": "Extract the Coefficients for the 'Adapted Paik et Al.' Model",
      "topics": [
        "coef.AdPaik"
      ]
    },
    {
      "page": "coefseAdPaik",
      "title": "Extracts the Standard Errors of the Coefficients for the 'Adapted Paik et Al.' Model",
      "topics": [
        "coefseAdPaik"
      ]
    },
    {
      "page": "confint.AdPaik",
      "title": "Extracts the Confidence Intervals for the Coefficients for the 'Adapted Paik et Al.' Model",
      "topics": [
        "confint.AdPaik"
      ]
    },
    {
      "page": "data_dropout",
      "title": "Dropout Dataset",
      "topics": [
        "data_dropout"
      ]
    },
    {
      "page": "extractAIC.AdPaik",
      "title": "Extract AIC for 'AdPaik' Objects",
      "topics": [
        "extractAIC.AdPaik"
      ]
    },
    {
      "page": "frailty_sd",
      "title": "Frailty Standard Deviation and Variance for the 'Adapted Paik et Al.'s Model'",
      "topics": [
        "frailty_sd"
      ]
    },
    {
      "page": "logLik.AdPaik",
      "title": "Extract Log-Likelihood for 'AdPaik' Objects",
      "topics": [
        "logLik.AdPaik"
      ]
    },
    {
      "page": "nobs.AdPaik",
      "title": "Extract Number of Observations for 'AdPaik'",
      "topics": [
        "nobs.AdPaik"
      ]
    },
    {
      "page": "plot_bas_hazard",
      "title": "Plot the Baseline Hazard Step-Function",
      "topics": [
        "plot_bas_hazard"
      ]
    },
    {
      "page": "plot_frailty_sd",
      "title": "Plot for the Frailty Standard Deviation or Variance",
      "topics": [
        "plot_frailty_sd"
      ]
    },
    {
      "page": "plot_post_frailty_est",
      "title": "Plot the Posterior Frailty Estimates",
      "topics": [
        "plot_post_frailty_est"
      ]
    },
    {
      "page": "plot_post_frailty_var",
      "title": "Plot the Posterior Frailty Variances",
      "topics": [
        "plot_post_frailty_var"
      ]
    },
    {
      "page": "plot_survivalAdPaik",
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      "topics": [
        "plot_survivalAdPaik"
      ]
    },
    {
      "page": "plot.AdPaik",
      "title": "Plots Related to the the 'Adapted Paik et Al.' Model",
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      ]
    },
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      ]
    },
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      "title": "Compute the Conditional Survival Function",
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      ]
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